Package: BGPhazard 2.1.1

BGPhazard: Markov Beta and Gamma Processes for Modeling Hazard Rates

Computes the hazard rate estimate as described by Nieto-Barajas & Walker (2002), Nieto-Barajas (2003), Nieto-Barajas & Walker (2007) and Nieto-Barajas & Yin (2008).

Authors:L. E. Nieto-Barajas, J. A. Garcia Bueno, E.A. Morones Ishikawa and J. Pliego

BGPhazard_2.1.1.tar.gz
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BGPhazard_2.1.1.tgz(r-4.4-any)BGPhazard_2.1.1.tgz(r-4.3-any)
BGPhazard_2.1.1.tar.gz(r-4.5-noble)BGPhazard_2.1.1.tar.gz(r-4.4-noble)
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BGPhazard.pdf |BGPhazard.html✨
BGPhazard/json (API)

# Install 'BGPhazard' in R:

install.packages('BGPhazard', repos = c('https://eami91.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/eami91/bgphazard/issues

Datasets:

BMTKleinbook - Times to death or relapse (in days) for patients with bone marrow transplants for Hodgkin and non-Hodgkin lymphoma
KIDNEY - Recurrent infection of kidney catheters
crm3 - Simulated data from the proportional hazards cure rate model of Yakolev & Tsodikov (1996) by taking a baseline density with a bounded support.
gehan - Times of Remission of Leukemia Patients
leukemiaFZ - Survival Times of Patients with Leukemia
psych - Death Times of Psychiatric Patients

On CRAN:

4.32 score 1 stars 21 scripts 329 downloads 21 exports 50 dependencies

Last updated 1 years agofrom:38b5da4457. Checks:OK: 7. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Oct 15 2024
R-4.5-win	OK	Oct 15 2024
R-4.5-linux	OK	Oct 15 2024
R-4.4-win	OK	Oct 15 2024
R-4.4-mac	OK	Oct 15 2024
R-4.3-win	OK	Oct 15 2024
R-4.3-mac	OK	Oct 15 2024

Exports:BeMRes BePlotDiag BePloth BSBHaz BSBInit BSBPlotDiag BSBPlotSumm BSBSumm CCuMRes CCuPlotDiag CCuPloth CGaMRes CGaPlotDiag CGaPloth cpo CuMRes CuPlotDiag CuPloth GaMRes GaPlotDiag GaPloth

Dependencies:bit bit64 Brobdingnag cli clipr colorspace cpp11 crayon dplyr fansi farver generics ggplot2 ggthemes glue gridExtra gtable hms isoband labeling lattice lifecycle magrittr MASS Matrix mgcv munsell nlme pillar pkgconfig prettyunits progress purrr R6 RColorBrewer readr rlang scales stringi stringr survival tibble tidyr tidyselect tzdb utf8 vctrs viridisLite vroom withr

Bivariate Model Example

Rendered frombivariate-model-example.Rmdusingknitr::rmarkdownon Oct 15 2024.

Last update: 2021-01-02
Started: 2020-08-23

Introduction to BGPhazard

José A. García-Bueno Emilio A. Morones Ishikawa and Luis E. Nieto-Barajas

Rendered fromBGPHhazard.Rmdusingknitr::rmarkdownon Oct 15 2024.

Last update: 2023-09-01
Started: 2023-09-01

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Markov Beta Model	BeMRes
Diagnosis plots for PI, U, C and Epsilon	BePlotDiag
Plots for the discrete Hazard and Survival Function Estimates	BePloth
BGPHazard: A package bayesian nonparametric inference in survival analysis.	BGPHazard
Times to death or relapse (in days) for patients with bone marrow transplants for Hodgkin and non-Hodgkin lymphoma	BMTKleinbook
BSBHaz posterior samples using Gibbs Sampler	BSBHaz
Initial setup for BSBHaz model	BSBInit
Plot diagnostics for BSBHaz model	BSBPlotDiag
Plot summaries for BSBHaz model	BSBPlotSumm
Get posterior summaries for BSBHaz model	BSBSumm
Bayesian Semiparametric Cure Rate Model with an Unknown Threshold and Covariate Information	CCuMRes
Diagnostics plots for Lambda, Theta, Delta, U, C, Pi, Z and Epsilon. Hazard function, cure proportion and cure time for the median observation.	CCuPlotDiag
Plots for the Hazard and Survival Funcion Estimates	CCuPloth
Markov Gamma Model with Covariates	CGaMRes
Diagnostics plots for lambda, U, C, Epsilon and Theta	CGaPlotDiag
Plots for the Hazard and Survival Funcion Estimates for the Bayesian non-parametric Markov gamma model with covariates in survival analysis.	CGaPloth
Conditional Predictive Ordinate (CPO) Statistic	cpo
Simulated data from the proportional hazards cure rate model of Yakolev & Tsodikov (1996) by taking a baseline density with a bounded support.	crm3
Bayesian Semiparametric Cure Rate Model with an Unknown Threshold	CuMRes
Diagnosis plots for Lambda, U, C, Mu, Pi, Z and Epsilon	CuPlotDiag
Plots for the Hazard and Survival Funcion Estimates	CuPloth
Markov Gamma Model	GaMRes
Diagnosis plots for Lambda, U, C and Epsilon	GaPlotDiag
Plots for the Hazard and Survival Function Estimates	GaPloth
Times of Remission of Leukemia Patients (Gehan)	gehan
Recurrent infection of kidney catheters	KIDNEY
Survival Times of Patients with Leukemia (Feigl and Zelen)	leukemiaFZ
Death Times of Psychiatric Patients (Woolson)	psych