Package: BGPhazard 2.1.1

BGPhazard: Markov Beta and Gamma Processes for Modeling Hazard Rates

Computes the hazard rate estimate as described by Nieto-Barajas & Walker (2002), Nieto-Barajas (2003), Nieto-Barajas & Walker (2007) and Nieto-Barajas & Yin (2008).

Authors:L. E. Nieto-Barajas, J. A. Garcia Bueno, E.A. Morones Ishikawa and J. Pliego

BGPhazard_2.1.1.tar.gz
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BGPhazard.pdf |BGPhazard.html✨
BGPhazard/json (API)

# Install 'BGPhazard' in R:
install.packages('BGPhazard', repos = c('https://eami91.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/eami91/bgphazard/issues

Datasets:
  • BMTKleinbook - Times to death or relapse (in days) for patients with bone marrow transplants for Hodgkin and non-Hodgkin lymphoma
  • KIDNEY - Recurrent infection of kidney catheters
  • crm3 - Simulated data from the proportional hazards cure rate model of Yakolev & Tsodikov (1996) by taking a baseline density with a bounded support.
  • gehan - Times of Remission of Leukemia Patients
  • leukemiaFZ - Survival Times of Patients with Leukemia
  • psych - Death Times of Psychiatric Patients

On CRAN:

4.32 score 1 stars 21 scripts 367 downloads 21 exports 50 dependencies

Last updated 1 years agofrom:38b5da4457. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 14 2024
R-4.5-winOKNov 14 2024
R-4.5-linuxOKNov 14 2024
R-4.4-winOKNov 14 2024
R-4.4-macOKNov 14 2024
R-4.3-winOKNov 14 2024
R-4.3-macOKNov 14 2024

Exports:BeMResBePlotDiagBePlothBSBHazBSBInitBSBPlotDiagBSBPlotSummBSBSummCCuMResCCuPlotDiagCCuPlothCGaMResCGaPlotDiagCGaPlothcpoCuMResCuPlotDiagCuPlothGaMResGaPlotDiagGaPloth

Dependencies:bitbit64Brobdingnagclicliprcolorspacecpp11crayondplyrfansifarvergenericsggplot2ggthemesgluegridExtragtablehmsisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigprettyunitsprogresspurrrR6RColorBrewerreadrrlangscalesstringistringrsurvivaltibbletidyrtidyselecttzdbutf8vctrsviridisLitevroomwithr

Bivariate Model Example

Rendered frombivariate-model-example.Rmdusingknitr::rmarkdownon Nov 14 2024.

Last update: 2021-01-02
Started: 2020-08-23

Introduction to BGPhazard

José A. García-Bueno Emilio A. Morones Ishikawa and Luis E. Nieto-Barajas

Rendered fromBGPHhazard.Rmdusingknitr::rmarkdownon Nov 14 2024.

Last update: 2023-09-01
Started: 2023-09-01

Readme and manuals

Help Manual

Help pageTopics
Markov Beta ModelBeMRes
Diagnosis plots for PI, U, C and EpsilonBePlotDiag
Plots for the discrete Hazard and Survival Function EstimatesBePloth
BGPHazard: A package bayesian nonparametric inference in survival analysis.BGPHazard
Times to death or relapse (in days) for patients with bone marrow transplants for Hodgkin and non-Hodgkin lymphomaBMTKleinbook
BSBHaz posterior samples using Gibbs SamplerBSBHaz
Initial setup for BSBHaz modelBSBInit
Plot diagnostics for BSBHaz modelBSBPlotDiag
Plot summaries for BSBHaz modelBSBPlotSumm
Get posterior summaries for BSBHaz modelBSBSumm
Bayesian Semiparametric Cure Rate Model with an Unknown Threshold and Covariate InformationCCuMRes
Diagnostics plots for Lambda, Theta, Delta, U, C, Pi, Z and Epsilon. Hazard function, cure proportion and cure time for the median observation.CCuPlotDiag
Plots for the Hazard and Survival Funcion EstimatesCCuPloth
Markov Gamma Model with CovariatesCGaMRes
Diagnostics plots for lambda, U, C, Epsilon and ThetaCGaPlotDiag
Plots for the Hazard and Survival Funcion Estimates for the Bayesian non-parametric Markov gamma model with covariates in survival analysis.CGaPloth
Conditional Predictive Ordinate (CPO) Statisticcpo
Simulated data from the proportional hazards cure rate model of Yakolev & Tsodikov (1996) by taking a baseline density with a bounded support.crm3
Bayesian Semiparametric Cure Rate Model with an Unknown ThresholdCuMRes
Diagnosis plots for Lambda, U, C, Mu, Pi, Z and EpsilonCuPlotDiag
Plots for the Hazard and Survival Funcion EstimatesCuPloth
Markov Gamma ModelGaMRes
Diagnosis plots for Lambda, U, C and EpsilonGaPlotDiag
Plots for the Hazard and Survival Function EstimatesGaPloth
Times of Remission of Leukemia Patients (Gehan)gehan
Recurrent infection of kidney cathetersKIDNEY
Survival Times of Patients with Leukemia (Feigl and Zelen)leukemiaFZ
Death Times of Psychiatric Patients (Woolson)psych